PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022779-PA
Common NameOsI_22709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 240aa    MW: 27364.3 Da    PI: 10.7318
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022779-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.3e-1795181690
              FAR1   6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +Ak+ GFsvrk++ +++  ++++ +r+f+Cs++g+ ++     ++++r++ra tr++ +a+++vk +k +g w v + + +H+H+la
  BGIOSGA022779-PA  95 FAKDKGFSVRKNNARRNPVTTQVFQRQFTCSRQGYMRDIYVGnSNRSREPRALTRCSSTAQFEVKHDKeKGDWFVLRYVRKHSHPLA 181
                       89********************************998865543789999*****************999****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1695181IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRSWPAREPK IGRRTHGLPA QNPRSPSDLG SAEVRDGSLP SPLFPPSPLP VSLAITITFI  60
HFVMLQDRHR YIMGDEMGDN LGASRSRGVC NVDCFAKDKG FSVRKNNARR NPVTTQVFQR  120
QFTCSRQGYM RDIYVGNSNR SREPRALTRC SSTAQFEVKH DKEKGDWFVL RYVRKHSHPL  180
AKADEVHFLR LHRKISNAVK ANVMDLKEVG LRQHLVMDVM ERQHGGFEST GFVSRGLYNC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2YC780.0A2YC78_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA022779-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-16FAR1-related sequence 5